Foreword
Contributors
Introduction: Computational Biology in 14 Brief Paragraphs
A.K. Konopka and M.J.C. Crabbe
BIOMOLECULAR SEQUENCE ANALYSIS
Introduction to Pragmatic Analysis of Nucleic Acid Sequences
A.K. Konopka
Motifs in Sequences: Localization and Extraction
M. Crochemore and M-F. Sagot
Protein Sequence Analysis and Prediction of Secondary Structural Features
J. Heringa
BIOPOLYMER STRUCTURE CALCULATION AND PREDICTION
Discrete Models of Biopolymers
P. Schuster and P.F. Stadler
Protein Structure Folding and Prediction
W.R. Taylor
DNA-Protein Interactions: Target Prediction
A. Sarai and H. Kono
GENOME ANALYSIS AND EVOLUTION
Methods of Computational Genomics: An Overview
F. Lisacek
Computational Aspects of Comparative Genomics
W. Makalowski and I. Makalowska
Computational Methods for Studying the Evolution of the Mitochondrial Genome
C. Saccone and G. Pesole
Appendix 1: Computational Biology: Annotated Glossary of Terms
A.K. Konopka, P. Bucher, M.J.C. Crabbe, M. Crochemore, J. Heringa, F. Lisacek, I. Makalowska, G. Pesole, C. Saccone, M-F. Sagot, A. Sarai, P. Stadler, and W.R. Taylor
Appendix 2: A Dictionary of Programs for Sequence Analysis
A.K. Konopka and J. Heringa
Index