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Functional Protein Microarrays in Drug Discovery

Edited by Paul F. Predki

Series Editor: Andrew Carmen

Contributors: Michael J. Taussig, Michael Snyder, Darrell P. Chandler, Arun Sreekumar, Scott N. Peterson, Thomas G. Chappell, Wieslaw Kudlicki, X. Y. Zhu, John D. Brennan, Barry Schweitzer, Shao Q. Yao, Steve Roman, Alan McWhirter, Stefan Lofas, Lance G. Laing, Brian Cunningham, Jun-ichi Satoh, Heng Zhu, Jing Huang, Steve H. Herrmann, Vehary Sakanyan, John Salon, Geeta Devgan, Minzi Ruan, Brad Love, Keith Robison, Kevin Clancy, Harry H. Yim, Patrick Burr, Getahun Tsegaye, Pratap Venepally, Steven H. Harwood, Federico Katzen, Athena Guo, Nicholas Rupcich, Dee Shen, Fang X. Zhou, Aparna Girish, Grace Y. J. Chen, Mingyue He, Farid Khan, Elizabeth Palmer, Scott Clarke, Daniel S. Schabacker, Sergei Bavykin, Igor M. Gavin, Barry S. Taylor, Xiaoju Wang, David Lubman, Arul M. Chinnaiyan, Marina Snapyan, Michael Johnson, Brian Rasnow, Gloria Biddlecome, Yulong Hong, Brian Webb, Ye Fang, Joydeep Lahiri, Mingwei Wang

Published March 30th 2007 by CRC Press – 480 pages

Series: Drug Discovery Series

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Description

As central actors in most biological functions, proteins are the subject of intense study. This has driven the development of increasingly sophisticated approaches for the study of proteins, which has extended to proteomic level methodologies. Yet currently no book has addressed all aspects of functional microarrays in a coherent and integrated fashion. Until now. Meeting the need for comprehensive and authoritative information, Functional Protein Microarrays in Drug Discovery provides an up-to-date overview of the field and the background required to actually design and develop arrays or perform and analyze array experiments.

The book is divided into five main sections that address critical aspects of the field. The first focuses on the generation of functional protein content, the first and perhaps most challenging aspect of protein microarrays. The second section describes ‘standard’ and state-of-the-art fabrication methods, focusing on issues of particular significance to functional protein microarrays. Similarly, the third section reviews current and next generation approaches to assay detection. The fourth and largest section, dedicated to applications, spans the breadth of published applications, from biomolecular interaction discovery and characterization to humoral response biomarker profiling, enzyme substrate identification and drug discovery. The final section addresses fundamental computational issues including image and data analysis as well as data visualization.

While the field’s early successes have set the stage for rapid growth, it is not without challenges. Indeed, challenges are to be expected in a fast-moving, interdisciplinary endeavor such as this, where molecular biology, protein chemistry, bioinformatics, engineering, and physical sciences intersect. As the first integrated reference for functional protein microarrays, this book helps you not only meet the challenges but also excel in your research.

X. Y. Zhu, one of the contributors to this text, was recently featured in an article in Austin's The Statesman.

Daniel E. Levy, editor of the Drug Discovery Series, is the founder of DEL BioPharma, a consulting service for drug discovery programs. He also maintains a blog that explores organic chemistry.

Reviews

"The first integrated reference for functional protein microarrays, this book helps you not only meet the challenges but also excel in your field."

– In Anticancer Research, September/ October 2007, Vol. 27, No. 5A

Contents

Functional Protein Content for Microarrays

High-Throughput Gene Cloning Using the Gateway®

Technology, S.N. Peterson, P. Burr, G. Tsegaye, and P. Venepally

Protein Expression for MicroArrays, H.H. Yim, T.G. Chappell, and S.H. Harwood

Emerging Trend: Cell-Free Protein Expression, F. Katzen and W. Kudlicki

Fabrication of Functional Protein Microarrays

The Critical Role of Surface Chemistry in Protein Microarrays, A. Guo and X.-Y. Zhu

Fabrication of Sol-Gel-Derived Protein Microarrays for Diagnostics and Screening, N. Rupcich and J.D. Brennan

Printing and QC of Functional Protein Microarrays, D. Shen, F.X. Zhou, and B. Schweitzer

Protein Engineering for Surface Attachment, A. Girish, G.Y.J. Chen, and S.Q. Yao

Protein In Situ Arrays through Cell-Free Protein Synthesis, M. He, F. Khan, E. Palmer, M. Wang, and M.J. Taussig

Detection Methods for Protein Microarrays

Fluorescent Detection Methods for Protein Microarrays, S. Roman and S. Clarke

Functional Analysis of Protein Interactions Using Surface Plasmon Resonance-Based Microarrays, A. McWhirter and S. Löfås

Leaving the Surface Behind: At the Intersection of Protein Microarrays and Mass Spectrometry, D.P. Chandler, D.S. Schabacker, S. Bavykin, and I.M. Gavin

High-Resolution Label-Free Detection Applied to Protein Microarray Research, L.G. Laing and B. Cunningham

Applications of Functional Protein Microarrays

Studying Protein–Protein Interactions with Protein Microarrays: Rapid Identification of 14-3-3 Protein Binding Partners, J.-i. Satoh

A Combined Force of Chemical Genetics and Protein Microarrays, H. Zhu and J. Huang

Antibody Profiling for Protein Drug Development and Clinical Development, S.H. Herrmann

Humoral Response Profiling Using Protein Microarrays, A. Sreekumar, B.S. Taylor, X. Wang, D. Lubman, and A.M. Chinnaiyan

DNA Interactions with Arrayed Proteins, M. Snapyan and V. Sakanyan

G Protein–Coupled Receptor Microarrays for Drug Discovery, J. Salon, M. Johnson, B. Rasnow, G. Biddlecome, Y. Hong, B. Webb, Y. Fang, and J. Lahiri

Kinase Substrate Identification Using Yeast Protein Microarrays, G. Devgan and M. Snyder

Bioinformatics & Data Analysis

Protein Microarray Image Analysis, M. Ruan

The Analysis of Protein Arrays, B. Love

Evaluating Precision and Recall in Functional Protein Arrays, K. Robison

Visualization of Protein Microarray Data, K. Clancy Index

Name: Functional Protein Microarrays in Drug Discovery (Hardback) – CRC Press 
Description: Edited by Paul F. PredkiSeries Editor: Andrew CarmenContributors: Michael J. Taussig, Michael Snyder, Darrell P. Chandler, Arun Sreekumar, Scott N. Peterson, Thomas G. Chappell, Wieslaw Kudlicki, X. Y. Zhu, John D. Brennan, Barry Schweitzer, Shao Q. Yao, Steve Roman, Alan McWhirter, Stefan Lofas, Lance G. Laing, Brian Cunningham, Jun-ichi Satoh, Heng Zhu, Jing Huang, Steve H. Herrmann, Vehary Sakanyan, John Salon, Geeta Devgan, Minzi Ruan, Brad Love, Keith Robison, Kevin Clancy, Harry H. Yim, Patrick Burr, Getahun Tsegaye, Pratap Venepally, Steven H. Harwood, Federico Katzen, Athena Guo, Nicholas Rupcich, Dee Shen, Fang X. Zhou, Aparna Girish, Grace Y. J. Chen, Mingyue He, Farid Khan, Elizabeth Palmer, Scott Clarke, Daniel S. Schabacker, Sergei Bavykin, Igor M. Gavin, Barry S. Taylor, Xiaoju Wang, David Lubman, Arul M. Chinnaiyan, Marina Snapyan, Michael Johnson, Brian Rasnow, Gloria Biddlecome, Yulong Hong, Brian Webb, Ye Fang, Joydeep Lahiri, Mingwei Wang. As central actors in most biological functions, proteins are the subject of intense study. This has driven the development of increasingly sophisticated approaches for the study of proteins, which has extended to proteomic level methodologies. Yet...
Categories: Bioscience, Medicinal & Pharmaceutical Chemistry, Biochemistry