1st Edition

Bayesian Analysis of Capture-Recapture Data with Hidden Markov Models Theory and Case Studies in R and NIMBLE

By Olivier Gimenez Copyright 2026
362 Pages 19 B/W Illustrations
by Chapman & Hall

362 Pages 19 B/W Illustrations
by Chapman & Hall

Bayesian Analysis of Capture-Recapture Data with Hidden Markov Models: Theory and Case Studies in R and NIMBLE introduces ecologists and statisticians to a powerful and unifying framework for analyzing capture-recapture data. Hidden Markov models (HMMs) have become a cornerstone in modern population ecology, offering a flexible way to decompose complex processes such as survival, recruitment,... Read more

1. Bayesian statistics & MCMC                                                                                
2.  NIMBLE tutorial                                                                                      
3. Hidden Markov models                                                                             
4. Alive and dead
5. Sites and states
6. Dealing with covariates                                                                             
7. Addressing model lack of fit
8. Quantifying life history traits        

Biography

Olivier Gimenez is a Research Director at the French National Centre for Scientific Research (CNRS), based at the Centre for Functional and Evolutionary Ecology (CEFE) in Montpellier. Trained as a statistician, he works at the interface of ecology, statistical modelling, and the social sciences, with a particular interest in human-wildlife interactions and population ecology. He coordinates several interdisciplinary projects focusing on mammals and their interactions with human activities. He is the founder of the Statistical Ecology Research Network (GDR Ecologie Statistique), a national network dedicated to statistical ecology. For more than 15 years, he has been teaching statistics to ecologists - especially Bayesian statistics over the past decade - to master’s and PhD students.