1st Edition
Data Integration, Manipulation and Visualization of Phylogenetic Trees
Chapter 1 Importing Tree with Data
Chapter 2 Manipulating Tree with Data
Chapter 3 Exporting tree with data
Chapter 4 Phylogenetic Tree Visualization
Chapter 5 Phylogenetic Tree Annotation
Chapter 6 Visual Exploration of Phylogenetic Tree
Chapter 7 Plotting tree with data
Chapter 8 Annotating Tree with Silhouette Images and Sub-plots
Chapter 9 ggtree for other tree-like objects
Chapter 10 ggtreeExtra for presenting data on a circular layout
Chapter 11 Other ggtree extensions
Chapter 12 ggtree utilities
Frequently asked questions
Related tools
Publications of the ggtree package suite
References
Biography
Guangchuang Yu is a professor of bioinformatics, director of the Department of Bioinformatics, Southern Medical University. He earned his Ph.D. from the School of Public Health, The University of Hong Kong. As an active R user, he has authored several R packages and has supervised post-graduate students to develop a few other packages, including ggmsa, ggtreeExtra, MicrobiomeProfiler and MicrobiotaProcess.
