Extending R: 1st Edition (Paperback) book cover

Extending R

1st Edition

By John M. Chambers

Chapman and Hall/CRC

364 pages | 7 B/W Illus.

CHOICE 2018 Outstanding Academic Title Award Winner
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Description

Up-to-Date Guidance from One of the Foremost Members of the R Core Team

Written by John M. Chambers, the leading developer of the original S software, Extending R covers key concepts and techniques in R to support analysis and research projects. It presents the core ideas of R, provides programming guidance for projects of all scales, and introduces new, valuable techniques that extend R.

The book first describes the fundamental characteristics and background of R, giving readers a foundation for the remainder of the text. It next discusses topics relevant to programming with R, including the apparatus that supports extensions. The book then extends R’s data structures through object-oriented programming, which is the key technique for coping with complexity. The book also incorporates a new structure for interfaces applicable to a variety of languages.

A reflection of what R is today, this guide explains how to design and organize extensions to R by correctly using objects, functions, and interfaces. It enables current and future users to add their own contributions and packages to R.

A 2017 Choice Outstanding Academic Title

Reviews

"Chambers, a consulting professor in the Department of Statistics at Stanford University, indicates that the purpose of this book is to encourage and help individuals develop extensions to the R software. Obviously, one must have experience using R and ideas for extensions that he or she would like to make, such as adding some functions or developing packages of different degrees of sophistication. The book contains three fundamental principles: every element that exists within R is an 'object,' all elements that happen within R are a 'function' call, and 'interfaces' to other software are part of R. These principles are then expanded in sections about ideas and history, aspects of programming in R, object-oriented programming, and interfaces from R to other software. As Chambers is the creator of the S software (the predecessor of R), any of his works are considered important and should be acquired by all statistical science libraries. This book will be a valuable guide for individuals who wish to develop their own extensions to R, whether at a modest or a more ambitious level.

Summing Up: Highly recommended. Lower-division undergraduates and above; faculty and professionals."

~R. Bharath, Northern Michigan University

". . . Chambers provides valuable insight into some of the thinking that led to major contributions to R’s development. For example, one section is divided thoughtfully into three themes, namely, programming in the small, in the medium, and in the large. Each theme is used to introduce and illustrate different aspects of the language, from the point of view of the kinds of activities that cluster within the themes, and here the book really shines. It is a pleasure to see how a crafter of tools thinks deeply about how the tool will be used."

~Andrew Robinson, University of Melbourne

"Doug Bates once said to me that 'There’s no doubt about John Chambers. He can see much further than the rest of us.' This latest book is yet another illustration of that incisive observation. It is fundamentally a book about perspectives and strategies. It gives a deep insight into the R landscape, its background and structure, and shows how users can work with R when they need to extend its facilities."

~Biometrics, June 2017

"This book is a must-have for anyone with a deep interest in statistical computing . . . you will learn some of the theory that underpins R, and see the directions in which you can extend it to solve your problems . . . it does give you powerful ways of thinking about programming on a large scale that will pay off as you tackle more ambitious projects."~Hadley Wickham, Journal of the American Statistical Association

" . . . any new book by John Chambers, the main developer of the original S language from which R derives, commands particular attention. . . Experienced R programmers will want a copy. R users seeking a deeper understanding of the internal structure of the language will also benefit, especially regarding aspects of functional programming and object-oriented computations.

~Christian Kleiber, Stat Papers

Table of Contents

Understanding R

Objects, Functions and Interfaces

Three Principles

Everything is an Object

Everything is a Function Call

Interfaces are Part of R

Functional Programming

Object-Oriented Programming

Evolution

Computational Methods

The First Version of S

Functional, Object-Based S

R Arrives and Evolves

Evolution of Object-Oriented Programming

Functional OOP in S and R

S4 and R

R in Operation

Objects and References

Function Calls

Interfaces

The R Evaluator

Programming with R

Small, Medium and Large

Functions

Functional Programming and R

Assignments and Replacements

Computing on the Language

Interfaces and Primitives

Getting it to Run Faster

Objects

Types and Attributes

Object Management

Reference Objects; Environments

Packages

Understanding Packages

Installing a Package

Loading and Attaching a Package

Sharing your Package

In the Large

Object-Oriented Programming

Classes and Methods in R

OOP Software in R

Functional and Encapsulated OOP

Creating Classes in R

Creating Methods in R

Example: Classes for Models

Functional OOP in R

Functional OOP in Extending R

Defining Classes

Defining Methods and Generic Functions

Classes and Methods in an R Package

Functional Classes in Detail

Generic Functions in Detail

Functional Methods in Detail

S3 Methods and Classes

Encapsulated OOP in R

The Structure of Encapsulated OOP

Using Encapsulated OOP

Defining Reference Classes

Fields in Reference Classes

Methods in Reference Classes

Functional Methods for Reference Classes

Interfaces

Understanding Interfaces

Introduction

Available Interfaces

Subroutines and Evaluators

Server Language Software

Server Language Computations

Server Language Object References

Data Conversion

Interfaces for Performance

The XR Structure for Interfaces

Introduction

The XR Interface Structure

Evaluator Objects and Methods

Application Programming

Specializing to the Server Language

Proxy Objects

Proxy Functions and Classes

Data Conversion

An Interface to Python

R and Python

Python Computations

Python Programming

Python Functions

Python Classes

Data Conversion

An Interface to Julia

R and Julia

Julia Computations

Julia Programming

Julia Functions

Julia Types

Data Conversion

Subroutine Interfaces

R, Subroutines and C++

C++ Interface Programming

C++ Functions

C++ Classes

Data Conversion

Bibliography

Index

About the Author

John M. Chambers is a consulting professor in the Department of Statistics at Stanford University. He previously worked at Bell Labs for 40 years, where he contributed to major research and management in statistical computing and related fields. He was the first statistician to be named a Bell Labs Fellow.

Chambers is best known for the creation and extension of the S software, the predecessor to today’s very popular R. He has continued to contribute essential new directions to R. In 1999, he was honored with the ACM Software System Award, which noted that "S has forever altered the way people analyze, visualize, and manipulate data."

He is a board member of the R Foundation and the R Consortium; a fellow of the ASA, the IMS, and the AAAS; and an elected member of the ISI. He is the author or co-author of nine books, including the first comprehensive book on computational methods for statistics.

About the Series

Chapman & Hall/CRC The R Series

Learn more…

Subject Categories

BISAC Subject Codes/Headings:
BUS061000
BUSINESS & ECONOMICS / Statistics
MAT029000
MATHEMATICS / Probability & Statistics / General