1st Edition
Microarray Image and Data Analysis Theory and Practice
Preface
Editor
Contributors
Introduction to Microarrays
Luis Rueda and Adnan Ali
Biological Aspects: Types and Applications of Microarrays
Adnan Ali
Gridding Methods for DNA Microarray Images
Iman Rezaeian and Luis Rueda
Machine Learning-Based DNA Microarray Image Gridding
Dimitris Bariamis, Michalis Savelonas, and Dimitris Maroulis
Non-Statistical Segmentation Methods for DNA Microarray Images
Shahram Shirani
Statistical Segmentation Methods for DNA Microarray Images
Meng-Yuan Tsai, Tai-Been Chen, and Henry Horng-Shing Lu
Microarray Image Restoration and Noise Filtering
Rastislav Lukac
Compression of DNA Microarray Images
Miguel Hern´andez-Cabronero, Michael W. Marcellin, and Joan Serra-Sagrist`a
Image Processing of Affymetrix Microarrays
Jose Manuel Arteaga-Salas
Treatment of Noise and Artifacts in Affymetrix Arrays
Caroline C. Friedel
Quality Control and Analysis Algorithms for Tissue Microarrays as Biomarker Validation Tools
Todd H. Stokes, Sonal Kothari, Chih-wen Cheng, and May D. Wang
CNV-Interactome-Transcriptome Integration to Detect Driver Genes in Cancerology
Maxime Garcia, Rapha¨ele Millat-Carus, Franc¸ois Bertucci, Pascal Finetti, Arnaud Guille, Jos´e Ad´ela¨ıde, Ismahane Bekhouche, Renaud Sabatier, Max Chaffanet, Daniel Birnbaum, and Ghislain Bidaut
Mining Gene-Sample-Time Microarray Data
Yifeng Li and Alioune Ngom
Systematic and Stochastic Biclustering Algorithms for Microarray Data Analysis
Wassim Ayadi, Mourad Elloumi, and Jin-Kao Hao
Reconstruction of Regulatory Networks from Microarray Data
Yiqian Zhou, Rehman Qureshi, Francis Bell, and Ahmet Sacan
Multidimensional Visualization of Microarray Data
Urˇska Cvek and Marjan Trutschl
Bioconductor Tools for Microarray Data Analysis
Simon Cockell, Matthew Bashton, and Colin S. Gillespie
Index
Biography
Luis Rueda is professor for the School of Computer Science, University of Windsor, Ontario, Canada. Before joining the University of Windsor, he earned a Ph.D from Carleton University, Ottawa, Ontario, Canada and spent two years at the University of Concepción, Chile. A member of IEEE, the Association for Computing Machinery, and the International Society for Computational Biology, he holds three patents on data encryption, secrecy, and stealth; has published over 100 journal and conference papers; and has participated in numerous editorial and technical committees. His research is primarily focused on machine learning and pattern recognition in transcriptomics, interactomics, and genomics.
