Omic Association Studies with R and Bioconductor: 1st Edition (Hardback) book cover

Omic Association Studies with R and Bioconductor

1st Edition

By Juan R. González, Alejandro Cáceres

Chapman and Hall/CRC

368 pages | 100 B/W Illus.

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Hardback: 9781138340565
pub: 2019-04-30
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Description

After the great expansion of genome-wide association studies, their scientific methodology and, notably, their data analysis has matured in recent years, and they are a keystone in large epidemiological studies. Newcomers to the field are confronted with a wealth of data, resources and methods. This book presents current methods to perform informative analyses using real and illustrative data with established bioinformatics tools, and guides the reader through the use of publicly available data. The code and datasets, as well as solutions will be accessible online to help readers reproduce all results and figures in the book.

Table of Contents

1 Introduction

2 Case examples

3 Dealing with omic data in Bioconductor

4 Genetic association studies

5 Genomic variant studies

6 Adressing batch effects

7 Transcriptomic studies

8 Epigenomic studies

9 Exposomic analysis

10 Enrichment analysis

11 Multiomic data analysis

About the Authors

Juan R. González, Barcelona Institute for Global Health (ISGlobal)

Alejandro Cáceres, Barcelona Institute for Global Health (ISGlobal)

Subject Categories

BISAC Subject Codes/Headings:
MAT029000
MATHEMATICS / Probability & Statistics / General
SCI008000
SCIENCE / Life Sciences / Biology / General