1st Edition

The Genome Editing Frontier Emerging Methods and Applications

264 Pages 25 B/W Illustrations
by CRC Press

The rapid evolution of biotechnology has ushered in an era in which the genome is no longer viewed as a static blueprint, but as a dynamic and editable system. The Genome Editing Frontier: Emerging Methods and Applications offers a comprehensive and forward-looking exploration of this transformation, tracing the field’s progression from foundational molecular tools to today’s high-precision,... Read more

Preface

About The Editors

List of Contributors

Chapter 01 The Genome Editing Revolution: Concepts, Tools, and Future Horizons

Deviprasad Mishra, Laxmipreeya Behera, Rakesh Kumar Patra, and Ashok Mishra

Chapter 02 Pre-CRISPR Genome Engineering Techniques (ZFNs and TALENs)

Sunil Kumar Sunani, Sandeep Kumar, Devendra Kumar Choudhary, Harvinder Kumar Singh, and Ramyashree Devi GS

Chapter 03 The CRISPR Toolbox: Expanding the Universe of Genome Editing

Devendra Kumar Choudhary, Harvinder Kumar Singh, Sunil Kumar Sunani, and Sandeep Kumar

Chapter 04 Next-Generation Functional Genomics: Methodologies for CRISPR-Based Screening

Keerthana K., and Asha Velayudhan Nair

Chapter 05 Multiplex Genome Editing: Concepts, Strategies, and Applications

Alok Ranjan Nayak, Abhijit Ratha, Anshuman Sarangi, and Neelanjana Choudhury

Chapter 06 Genome Editing in Stem Cells and Regenerative Medicine

Afreen Anis, and Nisha Kumari

Chapter 07 Precision Breeding 2.0: Accelerating Crop Improvement with Genome Editing

Devendra Kumar Choudhary, Harvinder Kumar Singh, Sunil Kumar Sunani, and Sandeep Kumar

Chapter 08 Genome Editing and Artificial Intelligence for Resilient Crop Disease Control

Aqleem Abbas, Yanyin Guo, Nana Ji, Huihui Xu, and Shanshan Hao

Chapter 09 CRISPR and Beyond: Next-Generation Tools for Environmental and Industrial Biotechnology

Subhashree Pattnaik, Sitanshu Sekhar Satapathy, and Kailash Chandra Samal

Chapter 10 Next-Generation Guide RNAs: Design, Delivery, and Specificity for Advanced Editing

Adeeb Rahman, and Neeti Sanan Mishra

Chapter 11 Epigenome Editing for Gene Regulation and Therapeutics

Laxmipreeya Behera, Ashok Mishra, Rakhi Biswal, Rakesh Kumar Patra, Abinash Mishra, and Kailash Chandra Samal

Chapter 12 Single-Cell Genome Editing Technologies

Marylin Taye, Dhritismita Deka, and Tuward J. Dweh

Chapter 13 Computational Tools and AI in Genome Editing Design

Sujaan Aehsas, and Prabhudatta Behera

Chapter 14 AI-Driven Design of CRISPR Immunotherapies

Radhakanta Nag, Prasanti Devi, and Subhashree Pattnaik

Chapter 15 Deep Learning for Predicting Genome Editing Outcomes: Efficiency, Specificity, and Repair Pathways

Selorm Adablanu

Chapter 16 Genome Editing in Zebrafish Revealing Functional Genomics Regenerative Potential and Therapeutic Discovery

Rutupurna Das, Sanjoy Majumder and Gagan Kumar Panigrahi

Chapter 17 Genome editing for remodeling root system architecture (RSA) to alleviate drought stress in crops

Upasana Mahopatra, Appanna V. Koppad, Gyanendra Kumar Patra, and Gowsiya Shaik

Chapter 18 Ethical, Regulatory, and Biosafety Considerations in Genome Editing

Ratikanta Mohapatra, Sougat Satapathy, Vishal, and Yogesh Dashrath Naik

Biography

Dr. Neelanjana Choudhury is currently serving as an Assistant Professor in the Department of Biotechnology at C. V. Raman Global University (CGU), Bhubaneswar, Odisha, with nearly 10 years of combined teaching and research experience. Her research expertise covers molecular biology, genomics, proteomics, gene expression studies, bioinformatics, ecotoxicology, aquatic toxicology, and applied biotechnology. She is an active contributor to intellectual property development, with 1 granted utility patent and 3 published patents (utility and design) in areas including novel drug development, bioactive compound extraction, green energy, biopolymers, and sustainable biotechnological systems. Her granted patent on anthocyanin isolation represents a significant contribution toward novel formulations for cancer and diabetes management. Dr. Choudhury has made notable contributions to molecular research through more than 18 international GenBank accessions, strengthening global biological databases and enhancing India’s representation in international repositories. She has published over 30 peer-reviewed research articles in the reputed Scopus, and SCI indexed international journals, along with two international books published by LAP Lambert Academic Publishing, Germany. She has successfully guided 31 postgraduate students and is currently supervising 4 Ph.D. research scholars. An internationally recognized academician, she has served as an invited, plenary, and keynote speaker at global conferences held in Canada, Japan, and the USA. Her achievements have been recognized through prestigious awards, including the Young Biotechnologist Award (2023) and Eminent Scientist Award (2023). She has also been a recipient of the “University Research Fellowship”, “Best Poster Award” in National Symposium on Plant Health Management for food security and safety (2016) by the Indian Phytopathology Society, and has secured First Rank in the “Biotech Talent Search Examination” conducted by BCIL, India. She also actively serves as a reviewer and editor for multiple international journals, contributing significantly to global scientific collaboration.

Dr. Jyoti Prakash Sahoo is a dynamic researcher and academician currently serving as an Assistant Professor in the Department of Biotechnology, Faculty of Agriculture and Allied Sciences at C.V. Raman Global University, Bhubaneswar, India. Dr. Sahoo completed his M.Sc. (2016) and PhD (2023) in Agricultural Biotechnology from Assam Agricultural University, Jorhat, India and Odisha University of Agriculture and Technology (OUAT), Bhubaneswar, India respectively. His notable works include dissecting genetic architecture for Cercospora leaf spot, yellow mosaic virus, charcoal rot  disease resistance in mung bean, molecular breeding strategies for stress resilience in crops, sustainable management of viral pathogens in okra, drought tolerance genetics in rice using microsatellite markers, and BADH2 gene-specific sequence variation and phylogenetic relationship in aromatic rice. His scholarly contributions have received over 1,000 citations, reflecting strong national and international research impact. He has published over 50 peer-reviewed research and review articles indexed by Scopus, and SCI, while also authoring 7 edited books and over 35 important chapters for widely-referenced agricultural biotechnology books. He is an active contributor to intellectual property development with 1 granted design patent. Dr. Sahoo has made notable contributions to molecular research through more than 9 NCBI GenBank accessions, strengthening global biological databases and enhancing India’s representation in international repositories. He has successfully guided 13 M.Sc. (Biotechnology) students and is currently supervising 2 Ph.D. (Biotechnology) students. He actively contributes as an editorial board member in Nature-Scientific Reports, BMC Genomics and servers as a potential peer reviewer for more than 80 prestigious international journals. He also holds life memberships in professional societies including the Society of Biotechnology and Bioinformatics and Indian Society of Plant Breeders. His outstanding contributions to plant molecular biology and biotechnology have been recognized with prestigious honors, including the young scientist award (2021), the university best PhD thesis award of OUAT (2023), and multiple best oral presentation awards (2023) at national and international conferences.

Prof. (Dr.) Dilip Kumar Dash is currently serving as Dean, Agriculture and Allied Sciences at C.V. Raman Global University, Bhubaneswar. With an illustrious academic career spanning over 42 years, he has made outstanding contributions to teaching, research, academic leadership, and policy advisory roles in the field of Horticulture. He obtained his Doctoral degree from the University of Agricultural Sciences, Bangalore, India. Throughout his career, Prof. Dash has held several prestigious academic and administrative positions, including Dean, College of Horticulture, and College of Agriculture, Chiplima, Odisha University of Agriculture and Technology (OUAT), as well as Professor and Head, Department of Fruit Science and Horticulture Technology, College of Agriculture, Bhubaneswar, OUAT. Prof. Dash’s research expertise is centered on crop improvement in major fruit crops, particularly coconut, papaya, and mango. His work spans diverse areas such as combining ability analysis, genetic divergence, molecular and morphological characterization, gamma radiation sensitivity studies, characterization of indigenous germplasm, plant tissue culture (callus induction and indirect regeneration), and evaluation of organic amendments for enhanced tree growth and yield. His research also addresses tree rejuvenation, canopy management, drip fertigation, and growth dynamics in perennial horticultural systems, contributing to sustainable and climate-resilient horticulture. A highly prolific researcher, Prof. Dash has published more than 100 research papers in Scopus-, SCI-, and NAAS-indexed national and international journals. He is a co-author of 4 books, has contributed 2 book chapters, and has edited 51 undergraduate practical manuals across horticulture and agriculture disciplines. Beyond academia, Prof. Dash has rendered significant service to the government and national agricultural bodies. He has served as a Member, Technical Committee, Directorate of Horticulture, Government of Odisha, India; Member, Technical Advisory Committee of the Coconut Development Board (CDB) Farm; Member, State-Level Monitoring Committee for implementation of CDB schemes; and Member, Seed Nut Procurement Committee of CDB. He has also contributed as a Resource Person for horticultural training programs, Co-Scientist (Horticulture) in the DBT-supported Rural Bio-Resource Complex, Puri District, Odisha, India, Member of the Monitoring Committee under the Technology Mission, and Team Member for the identification of new areas for oil palm cultivation in Odisha, India. Through his visionary academic leadership, impactful research, and sustained engagement with policy and extension activities, Prof. Dash continues to make enduring contributions to horticultural science, agricultural education, and sustainable rural development.

Dr. Satyabrata Nanda, PhD, is a progressive researcher and academician in Biotechnology, currently serving as Associate Dean at the School of Biotechnology, Centurion University of Technology and Management, Odisha. With over a decade of sustained teaching and research experience, he has established himself as a recognized expert in molecular plant–pest interactions, functional genomics, RNA interference (RNAi), and precision pest management. Dr. Nanda has authored more than 75 peer-reviewed research articles in reputed SCI- and Scopus-indexed journals, covering insect functional genomics, RNAi-based biopesticides, plant stress biology, gene family evolution, and sustainable crop protection. His scholarly contributions have received over 1,500 citations, with a Scopus h-index of 21, reflecting strong national and international research impact. Dr. Nanda has successfully secured competitive extramural research funding from agencies such as SERB, Government of India, and international postdoctoral grants from China. He has led multidisciplinary projects on brown planthopper–rice interactions, microRNA-mediated regulation, and RNAi-based pest control strategies. His research excellence has been recognized through multiple prestigious awards, including the Young Scientist Award, Distinguished Achiever Award, Abel Wolman Memorial Award, Eminent Achiever’s Award, and an Overseas Postdoctoral Fellowship from the Chinese Academy of Agricultural Sciences. Demonstrating strong translational impact, he holds four patents, including one utility patent and multiple design patents focused on IoT-enabled pest monitoring systems and sustainable agri-technologies. He serves on the editorial boards of BMC Plant Biology and BMC Genomics, acts as Review Editor for Frontiers in Plant Science, and mentors doctoral, postgraduate, and undergraduate students while providing effective academic leadership as Associate Dean and Coordinator of the Centre for Genetics and Genomics.