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Sequencing Technologies in Microbial Food Safety and Quality



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ISBN 9780367351182
April 15, 2021 Forthcoming by CRC Press
504 Pages 59 B/W Illustrations

 
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Book Description

Molecular landscape for food safety analysis is rapidly revolutionizing because of high resolution and value added resulting analysis of NGS approaches. These modern sequencing technologies drive worldwide advancements in food safety and quality. Sequencing Technologies in Microbial Food Safety and Quality reviews several practices in that NGS contributes to foodborne pathogens functional characterization, management and control. This book focuses on potential uses of sequencing technologies in microbial food safety and quality, also highlighting present challenges in the food industry.

Key Features:

  • Application of whole genome sequencing technologies in disease diagnostics, surveillance, transmission, and outbreak investigation in food sector
  • Impact of sequencing tools in the area of food microbiology
  • Recent advances in genomic DNA sequencing of microbial species from single cells
  • Microbial bioinformatics resources for food microbiology
  • High-throughput insertion tracking by deep sequencing for the analysis of food pathogens

This book includes contributions from experts who have manipulated sequencing tools in relation to microbial food safety and quality. Presenting comprehensive details about NGS approaches in food science, this book is an updated and reliable reference for food scientists, nutritionists, food product investigators to study and implement the sequencing technologies for development of quality and safe food. This book would also serve as informative resource for food industry officials, government researchers, food science or food nutrition department students who seek comprehensive knowledge about the role of emerging sequencing technologies in revolutionizing food industry.

Table of Contents

SECTION I INTRODUCTION, GENOMICS, PROTEOMICS AND BIOINFORMATICS

Chapter 1 Food Quality and Food Safety: An Introduction

Umar Farooq, Afshan Shafi, Muhammad Shahbaz, Muhammad Zaki Khan, Khizar Hayat, Muhammad Baqir, and Mariam Iqbal

Chapter 2 Foodborne Pathogens and Food Related Microorganisms

Mary Theresa, Aparna Sankaran Unni, Amala Geevarghese, Sebastain Korattiparambil Sebastian, Sunil Pareek, and Radhakrishnan Edayileveettil Krishnankutty

Chapter 3 Molecular Epidemiology of Foodborne Diseases

Afshan Shafi, Umar Farooq, Kashif Akram, Muhammad Zaki Khan, Zafar Hayat, and Khizar Hayat

Chapter 4 Nucleic Acid Based Molecular Techniques in Microbial Food Safety

Benssan K. Varghese, V.J. Rejish Kumar and Radhakrishnan Preetha

Chapter 5 Exploring the Landscape of the Genome and Transcriptome in Microbial Food Safety

Adil Hussain and Amjad Iqbal

Chapter 6 Proteomics Applications in Postharvest and Food Science

S. Prasanna Raghavender, C. Anoint Yochabedh and Radhakrishnan Preetha

Chapter 7 Impact of Sequencing and Bioinformatics Tools in the Area of Food Microbiology

Ramachandran Chelliah, Eric Banan-Mwine Daliri , Fazle Elahi, Imran Khan, Shuai Wei, Su-Jung Yeon, Kandasamy Saravanakumar, Inamul Hasan Madar, Sumaira Miskeen, Marie Arockianathan, Shanmugarathinam Alagarsamy, Thirumalai Vasan, Myeong-Hyeon Wang ,Usha Antony, Devarajan Thangadurai,  and Deog Hwan Oh    

 

SECTION II GENERATION OF SEQUENCING TECHNOLOGIES

Chapter 8 Evaluation on Sequencing Technologies for Food Science

Jorianne Thyeska Castro Alves, Mônica Silva de Oliveira, Gislenne Moia, Rosyely da Silva Oliveira, Ronilson Santos dos Santos, Pablo Henrique Caracciolo Gomes de Sá, and Adonney Allan de Oliveira Veras

Chapter 9 First Generation - The Sanger Shotgun Approach

Muhsin Jamal, Sana Raza, Sayed Muhammad Ata Ullah Shah Bukhari, Saadia Andleeb, Muhammad Asif Nawaz, Sidra Pervez, Liloma Shah and Redaina

Chapter 10 Fourth Generation - In Situ Sequencing

Sadhna Mishra, Arvind, Shikha Pandhi, and Dinesh Chandra Rai

Chapter 11 Library Preparations and Sequencing Platform for Improving Food Safety

Mahesh Pattabhiramaiah and Shanthala Mallikarjunaiah

Chapter 12 Microbial Genomes: Potential Systems for WGS and NGS

Debadarshee Das Mohapatra and Smaranika Pattnaik

Chapter 13 Single Cell Sequencing of Microbial Species

Charles Oluwaseun Adetunji, Wadzani Dauda Palnam, Juliana Bunmi Adetunji, Benjamin Ewa Ubi, Eugene Ayodele Ayeni, Devarajan Thangadurai, Muhammad Akram, Fahad Said Khan, Olugbenga Samuel Michael, Olugbemi Tope Olaniyan, Ajayi Kolawole Temidayo, Saher Islam, Arowora Kayode Adebisi, and Daniel Ingo Hefft

Chapter 14 Whole Genome Sequencing for Food Safety and Quality

Sadhna Mishra, Arvind, Shikha Pandhi, and Dinesh Chandra Rai

 

SECTION III HIGH THROUGHPUT SEQUENCING TECHNOLOGIES APPLICATIONS FOR FOOD SAFETY AND QUALITY

Chapter 15 Current Trends in the Detection of Foodborne Pathogens and Maintenance of Microbial Food Safety and Quality based on Ribosomal RNA Approaches

Charles Oluwaseun Adetunji, Ayodele Eugene Ayeni, Olugbemi Tope Olaniyan, Muhammad Akram, Benjamin Ewa Ubi, Saher Islam, Umme Laila, Mehvish Ajaz, Wadzani Dauda Palnam, Devarajan Thangadurai, Olugbenga Samuel Michael, Juliana Bunmi Adetunji, Fahad Said Khan, and Daniel Ingo Hefft

Chapter 16 Application of WGS Technologies in Disease Diagnostics, Surveillance, Transmission, and Outbreak Investigation in Food Sector

Nayana Aluparambil Radhakrishnan, Sreejith Sreekumaran, Akshaya Chekkara Thandayan Santhosh, Sunil Pareek, and Radhakrishnan Edayileveettil Krishnankutty

Chapter 17 High-Throughput Sequencing: A Gateway to Improve Food Quality

Charles Oluwaseun Adetunji, Muhammad Akram, Olugbenga Samuel Michael, Juliana Bunmi Adetunji, Fahad Said Khan, Olugbemi Tope Olaniyan, Devarajan Thangadurai, Ajayi Kolawole Temidayo, Wadzani Dauda Palnam, Saher Islam, Kayode Adebisi Arowora, Benjamin Ewa Ubi, Ayodele Eugene Ayeni, and Daniel Ingo Hefft

Chapter 18 High Throughput Sequencing for Detection of Foodborne Pathogen in Food Safety

Mahesh Pattabhiramaiah and Shanthala Mallikarjunaiah

Chapter 19 Examining Microbial Ecology of Food using NGS Techniques

Nayana Aluparambil Radhakrishnan, Amisha Mathew, Sunil Pareek, and Radhakrishnan Edayileveettil Krishnankutty

Chapter 20 Application of Next-Generation Sequencing Techniques in Food Related Microbiome Studies

Ramachandran Chelliah, Eric Banan-Mwine Daliri, Fazle Elahi, Imran Khan, Shuai Wei, Su-Jung Yeon, Kandasamy Saravanakumar, Inamul Hasan Madar, Sumaira Miskeen, Marie Arockianathan, Shanmugarathinam Alagarsamy, Thirumalai Vasan, Myeong-Hyeon Wang, Usha Antony, Devarajan Thangadurai, and Deog Hwan Oh

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Editor(s)

Biography

Devarajan Thangadurai, PhD, is Assistant Professor at Karnatak University, Dharwad in India and did his postdoctoral research at the University of Madeira, Portugal, University of Delhi, India, and ICAR National Research Centre for Banana, India. He is the recipient of Best Young Scientist Award with Gold Medal from Acharya Nagarjuna University, India, and the VGST-SMYSR Young Scientist Award of the Government of Karnataka, India. He has keen interest and expertise in the fields of biodiversity and biotechnology, genetics and genomics of food crops and beneficial microbes for crop productivity and food safety towards sustainable agricultural development. He has authored and edited more than twenty books including Genetic Resources and Biotechnology (3 Vols.), Genes, Genomes and Genomics (2 Vols.), Genomics and Proteomics, and, Biotechnology of Microorganisms with international scientific publishers in USA, Canada and India. He has extensively travelled to many universities and institutes in Africa, Europe and Asia for academic works, scientific meetings, and international collaborations. He is also reviewer for several journals including Comprehensive Reviews in Food Science and Food Safety, Food Science and Technology International, Journal of Agricultural and Food Chemistry, Journal of Food Science, Journal of the Science of Food and Agriculture, and, International Journal of Plant Production.

Leo M. L. Nollet earned an MS (1973) and PhD (1978) in biology from the Katholieke Universiteit Leuven, Belgium. He is an editor and associate editor of numerous books. He edited for M. Dekker, New York—now CRC Press of Taylor & Francis Publishing Group—the first, second, and third editions of Food Analysis by HPLC and Handbook of Food Analysis. The last edition is a two-volume book. Dr. Nollet also edited the Handbook of Water Analysis (first, second, and third editions) and Chromatographic Analysis of the Environment, third and fourth editions (CRC Press). With F. Toldrá, he coedited two books published in 2006, 2007, and 2017: Advanced Technologies for Meat Processing (CRC Press) and Advances in Food Diagnostics (Blackwell Publishing—now Wiley). With M. Poschl, he coedited the book Radionuclide Concentrations in Foods and the Environment, also published in 2006 (CRC Press). Dr. Nollet has also coedited with Y. H. Hui and other colleagues on several books: Handbook of Food Product Manufacturing (Wiley, 2007), Handbook of Food Science, Technology, and Engineering (CRC Press, 2005), Food Biochemistry and Food Processing (first and second editions; Blackwell Publishing—now Wiley—2006 and 2012), and the Handbook of Fruits and Vegetable Flavors (Wiley, 2010). In addition, he edited the Handbook of Meat, Poultry, and Seafood Quality, first and second editions (Blackwell Publishing—now Wiley—2007 and 2012). From 2008 to 2011, he published five volumes on animal product-related books with F. Toldrá: Handbook of Muscle Foods Analysis, Handbook of Processed Meats and Poultry Analysis, Handbook of Seafood and Seafood Products Analysis, Handbook of Dairy Foods Analysis, and Handbook of Analysis of Edible Animal By-Products. Also, in 2011, with F. Toldrá, he coedited two volumes for CRC Press: Safety Analysis of Foods of Animal Origin and Sensory Analysis of Foods of Animal Origin. In 2012, they published the Handbook of Analysis of Active Compounds in Functional Foods. In a coedition with Hamir Rathore, Handbook of Pesticides: Methods of Pesticides Residues Analysis was marketed in 2009; Pesticides: Evaluation of Environmental Pollution in 2012; Biopesticides Handbook in 2015; and Green Pesticides Handbook: Essential Oils for Pest Control in 2017. Other finished book projects include Food Allergens: Analysis, Instrumentation, and Methods (with A. van Hengel; CRC Press, 2011) and Analysis of Endocrine Compounds in Food (Wiley-Blackwell, 2011). Dr. Nollet’s recent projects include Proteomics in Foods with F. Toldrá (Springer, 2013) and Transformation Products of Emerging Contaminants in the Environment: Analysis, Processes, Occurrence, Effects, and Risks with D. Lambropoulou (Wiley, 2014). In the series Food Analysis & Properties, he edited (with C. Ruiz-Capillas) Flow Injection Analysis of Food Additives (CRC Press, 2015) and Marine Microorganisms: Extraction and Analysis of Bioactive Compounds (CRC Press, 2016). With A.S. Franca, he coedited Spectroscopic Methods in Food Analysis (CRC Press, 2017), and with Horacio Heinzen and Amadeo R. Fernandez-Alba he coedited Multiresidue Methods for the Analysis of Pesticide Residues in Food (CRC Press, 2017).

Saher Islam, PhD, is an HEC Scholar (Higher Education Commission) of the Islamic Republic of Pakistan at the University of Veterinary and Animal Sciences, Lahore, where she received her BS, MPhil and PhD in Molecular Biology, Biotechnology and Bioinformatics. She was an IRSIP Scholar at Cornell University, New York and Visiting Scholar at West Virginia State University, West Virginia in USA. She has keen research interests in genetics, molecular biology, biotechnology, and bioinformatics, and has ample hands on experience in molecular marker analysis, whole genome sequencing and RNA sequencing. She has visited USA, UK, Singapore, Germany, Italy and Russia for academic and scientific trainings, courses, and meetings. She is the recipient of 2016 Boehringer Ingelheim Fonds Travel Grant from European Molecular Biology Laboratory, Germany.

Jeyabalan Sangeetha, PhD, is an Assistant Professor at Central University of Kerala, Kasaragod, India. She earned her BSc in Microbiology (2001) and PhD in Environmental Sciences (2010) from Bharathidasan University, Tiruchirappalli, Tamil Nadu, India. She holds an MSc in Environmental Sciences (2003) from Bharathiar University, Coimbatore, Tamil Nadu, India. Between 2004 and 2008, she was the recipient of Tamil Nadu Government Scholarship and the Rajiv Gandhi National Fellowship of University Grants Commission, Government of India for doctoral studies. She served as Dr. D.S. Kothari Postdoctoral Fellow and UGC Postdoctoral Fellow at Karnatak University, Dharwad, South India during 2012-2016 with funding from University Grants Commission, Government of India, New Delhi. She has carried out her doctoral and postdoctoral research in the fields of microbiology and metagenomics respectively. She has authored a text book on Molecular Mycology and edited seven books including Genomics and Proteomics, Industrial Biotechnology and Biotechnology of Microorganisms. She has got trained in next generation sequencing and data analysis at Malaysia Genome Institute, Malaysia.