1st Edition
Sequencing Technologies in Microbial Food Safety and Quality
Molecular landscape for food safety analysis is rapidly revolutionizing because of high resolution and value added resulting analysis of next-generation sequencing (NGS) approaches. These modern sequencing technologies drive worldwide advancements in food safety and quality. Sequencing Technologies in Microbial Food Safety and Quality reviews several practices in that NGS contributes to foodborne pathogens functional characterization, management and control. This book focuses on potential uses of sequencing technologies in microbial food safety and quality and highlights present challenges in the food industry.
Key Features:
- Application of whole genome sequencing technologies in disease diagnostics, surveillance, transmission, and outbreak investigation in food sector
- Impact of sequencing tools in the area of food microbiology
- Recent advances in genomic DNA sequencing of microbial species from single cells
- Microbial bioinformatics resources for food microbiology
- High-throughput insertion tracking by deep sequencing for the analysis of food pathogens
This book includes contributions from experts who have manipulated sequencing tools in relation to microbial food safety and quality. Presenting comprehensive details about NGS approaches in food science, this book is an updated and reliable reference for food scientists, nutritionists, food product investigators to study and implement the sequencing technologies for developing quality and safe food. This book would also serve as informative resource for food industry officials, government researchers, food science or food nutrition students who seek comprehensive knowledge about the role of emerging sequencing technologies in revolutionizing the food industry.
Series Preface
Preface
Editors
Contributors
PART I Introduction, Genomics, Proteomics, and Bioinformatics
Chapter 1 Food Quality and Food Safety: An Introduction
Umar Farooq, Afshan Shafi, Muhammad Shahbaz, Muhammad Zaki Khan, Khizar Hayat, Muhammad Baqir, and Mariam Iqbal
Chapter 2 Foodborne Pathogens and Food-Related Microorganisms
Mary Theresa, Aparna Sankaran Unni, Amala Geevarghese, Sebastain Korattiparambil Sebastian, Sunil Pareek, and Radhakrishnan Edayileveettil Krishnankutty
Chapter 3 Molecular Epidemiology of Foodborne Diseases
Afshan Shafi, Umar Farooq, Kashif Akram, Muhammad Zaki Khan, Zafar Hayat, and Khizar Hayat
Chapter 4 Nucleic Acid-Based Molecular Techniques in Microbial Food Safety
Benssan K. Varghese, V.J. Rejish Kumar, and Radhakrishnan Preetha
Chapter 5 Exploring the Landscape of the Genome and Transcriptome in Microbial Food Safety
Adil Hussain and Amjad Iqbal
Chapter 6 Proteomics Applications in Postharvest and Food Science
S. Prasanna Raghavender, C. Anoint Yochabedh, and Radhakrishnan Preetha
Chapter 7 Impact of Sequencing and Bioinformatics Tools in Food Microbiology
Ramachandran Chelliah, Eric Banan-Mwine Daliri, Fazle Elahi, Imran Khan, Shuai Wei, Su-Jung Yeon, Kandasamy Saravanakumar, Inamul Hasan Madar, Sumaira Miskeen, Ghazala Sultan, Marie Arockianathan, Shanmugarathinam Alagarsamy, Thirumalai Vasan, Myeong-Hyeon Wang, Usha Antony, Devarajan Thangadurai, and Deog Hwan Oh
PART II Generation of Sequencing Technologies
Chapter 8 Evaluation of Sequencing Technologies in Food Science
Jorianne Thyeska Castro Alves, Mônica Silva de Oliveira, Gislenne Moia, Rosyely da Silva Oliveira, Ronilson Santos dos Santos, Pablo Henrique Caracciolo Gomes de Sá, and Adonney Allan de Oliveira Veras
Chapter 9 First Generation–The Sanger Shotgun Approach
Muhsin Jamal, Sana Raza, Sayed Muhammad Ata Ullah Shah Bukhari, Saadia Andleeb, Muhammad Asif Nawaz, Sidra Pervez, Liloma Shah, and Redaina
Chapter 10 Fourth Generation–In Situ Sequencing
Sadhna Mishra, Arvind Kumar, Shikha Pandhi, and Dinesh Chandra Rai
Chapter 11 Library Preparations and Sequencing Platform for Improving Food Safety
Mahesh Pattabhiramaiah and Shanthala Mallikarjunaiah
Chapter 12 Microbial Genomes: Potential Systems for WGS and NGS
Debadarshee Das Mohapatra and Smaranika Pattnaik
Chapter 13 Single Cell Sequencing of Microbial Species
Charles Oluwaseun Adetunji, Wadzani Dauda Palnam, Juliana Bunmi Adetunji, Benjamin Ewa Ubi, Ayodele Eugene Ayeni, Devarajan Thangadurai, Muhammad Akram, Fahad Said Khan, Olugbenga Samuel Michael, Olugbemi Tope Olaniyan, Ajayi Kolawole Temidayo, Saher Islam, Arowora Kayode Adebisi, and Daniel Ingo Hefft
PART III High-Throughput Sequencing Technology Applications for Food Safety and Quality
Chapter 14 Current Trends in the Detection of Foodborne Pathogens and Maintenance of Microbial Food Safety and Quality Based on Ribosomal RNA Approaches
Charles Oluwaseun Adetunji, Ayodele Eugene Ayeni, Olugbemi Tope Olaniyan, Muhammad Akram, Benjamin Ewa Ubi, Saher Islam, Umme Laila, Mehvish Ajaz, Wadzani Dauda Palnam, Devarajan Thangadurai, Olugbenga Samuel Michael, Juliana Bunmi Adetunji, Fahad Said Khan, and Daniel Ingo Hefft
Chapter 15 Application of WGS Technologies in Disease Diagnostics, Surveillance, Transmission, and Outbreak Investigation in the Food Sector
Nayana Aluparambil Radhakrishnan, Sreejith Sreekumaran, Akshaya Chekkara Thandayan Santhosh, Sunil Pareek, and Radhakrishnan Edayileveettil Krishnankutty
Chapter 16 High-Throughput Sequencing for Detection of Foodborne Pathogens in Food Safety
Mahesh Pattabhiramaiah and Shanthala Mallikarjunaiah
Chapter 17 Examining Microbial Ecology of Food Using NGS Techniques
Nayana Aluparambil Radhakrishnan, Amisha Mathew, Sunil Pareek, and Radhakrishnan Edayileveettil Krishnankutty
Chapter 18 Application of Next-Generation Sequencing Techniques in Food-Related Microbiome Studies
Ramachandran Chelliah, Eric Banan-Mwine Daliri, Fazle Elahi, Imran Khan, Shuai Wei, Su-Jung Yeon, Kandasamy Saravanakumar, Inamul Hasan Madar, Sumaira Miskeen, Ghazala Sultan, Marie Arockianathan, Shanmugarathinam Alagarsamy, Thirumalai Vasan, Myeong-Hyeon Wang, Usha Antony, Devarajan Thangadurai, and Deog Hwan Oh
Index
Biography
Devarajan Thangardurai, Leo M.L. Nollet, Saher Islam, Jeyabalan Sangeetha
